Computational Methods & Tools in Biophysics

(Note: some of the URLs have changed over time, so if you are redirected to a blank page just Google the name of the software/web-server to find the new URL)


1. Macromolecular simulations

2. Continuum-Solvent Model Calculations

3. Molecular Mechanics & Dynamics

4. Statistical Mechanics

5. Protein Dynamics

  • HingeProt (uses normal mode analysis to predict dynamic changes in proteins)

6. Molecular Docking

7. Protein-Membrane Interactions

8. Molecular Visualization & Graphics

9. Protein Design

10. Structure Analysis & Preparation

11. Experimental Methods (under construction…)

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